PP_000T8VE.2

USA/PP_000T8VE.2
S. Hunt, N. Shashan, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
WRAIR 7-61

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIa
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Host

Host

Submission details

Submission ID
OK573117.1
Submitting group
Date submitted
2025-02-03 15:01:44 UTC
Date released
2025-02-03 15:04:56 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
3904 (2.79%)
# of SNPs
11
# of inserted bases
1
# of deleted bases
1602
# of frame shifts
1
Frame shifts
OPG210:1842-1843(nt:186879-186884)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • T183008C
  • C183466A
  • A183473G
  • A183695G
  • T183696C
  • A184137G
  • G186791A
  • A186873C
  • T186996G
  • A187021C
  • A187022C
Deletions

186794-186871, 186885-186993, 187000-187019, 187025-187090, 187094-188422
Insertions

ins_186878:G

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG210

  • OPG210:S704Y
  • OPG210:S781P
  • OPG210:T928A
  • OPG210:A1841E
Deletions

OPG210

OPG210:1814-1835
Insertions
N/A

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