PP_000T8UG.1

USA/PP_000T8UG.1
S. Hunt, N. Shashan, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
WRAIR 7-61

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIa
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30

Host

Host

Submission details

Submission ID
OK573116.1
Submitting group
Date submitted
2024-12-09 18:47:55 UTC
Date released
2024-12-09 18:51:44 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
4148 (56.9%)
# of SNPs
108
# of inserted bases
8
# of deleted bases
108090
# of frame shifts
13
Frame shifts
OPG057:68-96(nt:39908-39994),OPG057:123-165(nt:39702-39829),OPG057:174-222(nt:39532-39678),OPG057:257-260(nt:39418-39427),OPG057:325-373(nt:39077-39223),OPG061:48-232(nt:41189-41743),OPG064:289-293(nt:45022-45036),OPG064:386-465(nt:44505-44743),OPG064:507-508(nt:44377-44380),OPG064:549-579(nt:44162-44256),OPG064:588-649(nt:43953-44139),OPG064:693-717(nt:43750-43822),OPG064:722-723(nt:43730-43735)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • A39169G
  • C39171G
  • T39172G
  • A39217G
  • A39218G
  • T39220G
  • G39221C
  • A39296G
  • T39298A
  • A39314C
  • T39315G
  • T39420G
  • T39423A
  • A39426T
  • A39446T
  • T39447G
  • T39448G
  • T39453G
Deletions

39177-39212, 39224-39293, 39302-39310, 39320-39417, 39428-39443, 39456-39531, 39563-39668, 39679-39682, 39688-39701, 39706-39731, 39746-39784, 39788-39821, 39830-39887, 39895-39907, 39915-39990, 39995-40043, 43742-43749, 43760-43770, 43780, 43784, 43785, 43794-43797, 43805-43815, 43823, 43824, 43844-43952, 43961-43972, 43979-44117, 44140-44152, 44160, 44161, 44177-44188, 44192-44250,...
Insertions

ins_41743:TT, ins_43729:A, ins_43735:AAGGT

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG064

  • OPG064:I77S
  • OPG064:T78N
  • OPG064:K79R
  • OPG064:N82L
  • OPG064:A87G
  • OPG064:H89S
  • OPG064:I90P
  • OPG064:N91P
  • OPG064:M110S
  • OPG064:Q541P
  • OPG064:D542S
  • OPG064:T725A
Deletions

OPG057

OPG057:52-67, OPG057:97-122, OPG057:166-170, OPG057:172, OPG057:173, OPG057:223-256, OPG057:261-324

OPG064

OPG064:113-288, OPG064:294-385, OPG064:466-506, OPG064:509-538, OPG064:544-548, OPG064:580-587, OPG064:650-685, OPG064:718, OPG064:719
Insertions

OPG064

ins_OPG064:721:TX

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