PP_000T8PS.2

USA/PP_000T8PS.2
S. Hunt, N. Shashan, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
WRAIR 7-61

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIa
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Host

Host

Submission details

Submission ID
OK573111.1
Submitting group
Date submitted
2025-02-03 15:01:44 UTC
Date released
2025-02-03 15:04:56 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
7213 (3.81%)
# of SNPs
47
# of deleted bases
291
# of frame shifts
2
Frame shifts
OPG123:195-223(nt:104404-104489),OPG123:231-241(nt:104348-104382)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • C104330G
  • T104350G
  • A104354G
  • A104355G
  • A104356G
  • C104357T
  • T104358A
  • C104359T
  • T104361G
  • T104364G
  • T104365A
  • A104366G
  • G104372A
  • G104376C
  • A104377G
  • C104379A
  • T104381A
  • T104393A
Deletions

104332-104347, 104383-104390, 104402, 104403, 104426-104431, 104438-104467, 104490-104718
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG123

  • OPG123:V29A

OPG125

  • OPG125:H97N
  • OPG125:L399I
  • OPG125:I514V

OPG130

  • OPG130:T63A
Deletions

OPG123

OPG123:119-194, OPG123:224-230
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue