PP_000T8MW.2

USA/PP_000T8MW.2
S. Hunt, N. Shashan, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
WRAIR 7-61

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIa
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Host

Host

Submission details

Submission ID
OK573109.1
Submitting group
Date submitted
2025-02-03 15:01:44 UTC
Date released
2025-02-03 15:03:56 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
7697 (4.04%)
# of SNPs
46
# of inserted bases
37
# of deleted bases
302

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • A8955G
  • C8960A
  • T8971A
  • C8972A
  • A8988G
  • T8993C
  • G8996A
  • C9034A
  • T9036A
  • A9040T
  • C9041A
  • A9042T
  • T9057C
  • A9059C
  • C9061A
  • G9063A
  • T9064A
  • T9066A
Deletions

8902-8952, 8964-8968, 8975-8983, 9000, 9001, 9006-9014, 9019-9029, 9048-9053, 9070-9079, 9082-9092, 9097-9101, 9119-9129, 9135-9203, 9208-9217, 9233-9302, 13272, 13273, 15512-15532
Insertions

ins_8989:AT, ins_10453:TAGATTAGATTAGATTAGATTAGATTAGAT, ins_12984:AT, ins_16622:ATC

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG021

  • OPG021:K230R

OPG022

  • OPG022:G73D

OPG023

  • OPG023:D386N
  • OPG023:V426A
  • OPG023:T488A
  • OPG023:Y606H

OPG025

  • OPG025:C520Y
Deletions
N/A
Insertions

OPG029

ins_OPG029:154:D

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