PP_000T8F9.2

USA/PP_000T8F9.2
N. Shashan, J. Makarenko, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
USA-2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
unassigned
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Submission details

Submission ID
OK573103.1
Submitting group
Date submitted
2025-02-03 15:01:44 UTC
Date released
2025-02-03 15:03:56 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
282 (0.196%)
# of SNPs
47
# of inserted bases
7
# of deleted bases
111

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • A196752T
  • T196755G
  • G196757C
  • G196761C
  • C196795A
  • G196798C
  • T196800C
  • A196801T
  • A196802T
  • C196803T
  • A196804C
  • C196806G
  • A196809G
  • T196810G
  • A196812G
  • T196821A
  • T196823A
  • A196893C
Deletions

196763-196774, 196781-196791, 196814-196816, 196828-196831, 196835-196857, 196862-196885, 196919-196923, 196947-196951, 196966-196986, 197002-197004
Insertions

ins_196903:C, ins_196997:GAG, ins_197011:CGT

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions
N/A
Deletions
N/A
Insertions
N/A

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