PP_000T8CF.2

USA/PP_000T8CF.2
N. Shashan, J. Makarenko, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
USA-2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
unassigned
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Submission details

Submission ID
OK573100.1
Submitting group
Date submitted
2025-02-03 15:01:44 UTC
Date released
2025-02-03 15:04:26 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
430 (0.233%)
# of SNPs
4
# of deleted bases
29
# of frame shifts
1
Frame shifts
OPG074:397-666(nt:55128-55937)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • T55935G
  • A55971T
  • A55972C
  • A56253T
Deletions

55938-55966
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG074

  • OPG074:F291L
  • OPG074:V385G
Deletions

OPG074

OPG074:388-396
Insertions
N/A

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