PP_000T87R.2

USA/PP_000T87R.2
N. Shashan, J. Makarenko, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
USA-2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIb
Outbreak
sh2017
Lineage
A

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Submission details

Submission ID
OK573095.1
Submitting group
Date submitted
2025-02-03 15:01:44 UTC
Date released
2025-02-03 15:04:26 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
441 (45.4%)
# of SNPs
20
# of deleted bases
89178
# of frame shifts
1
Frame shifts
OPG093:165-193(nt:73469-73556)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • G73148C
  • C73248T
  • C73249A
  • G73251T
  • A73252C
  • T73253C
  • T73262C
  • T73513C
  • G73514C
  • A73516G
  • C73519G
  • C73522T
  • G73524C
  • G73525A
  • A73527T
  • C73555G
  • G73610A
  • C73614T
  • C73616A
  • A73821G
Deletions

73149-73241, 73263-73468, 73476-73507, 73530-73548, 73557-73608, 73972-132700, 132708-162754
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG093

  • OPG093:D88V
  • OPG093:P91Y
  • OPG093:D92S
Deletions

OPG093

OPG093:96-164, OPG093:194-211
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue