PP_000T86T.2

USA/PP_000T86T.2
N. Shashan, J. Makarenko, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
USA-2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
II
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Submission details

Submission ID
OK573094.1
Submitting group
Date submitted
2025-02-03 15:01:44 UTC
Date released
2025-02-03 15:04:26 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
442 (0.371%)
# of SNPs
13
# of deleted bases
290
# of frame shifts
2
Frame shifts
OPG092:40-60(nt:72769-72830),OPG092:84-372(nt:71832-72698)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • C72673T
  • T72679A
  • C72691G
  • T72693A
  • A72696T
  • G72771T
  • A72827G
  • A72907G
  • T72909G
  • T72911A
  • T72964C
  • A73000G
  • A73004C
Deletions

72680-72689, 72699-72750, 72758-72768, 72776-72825, 72831-72904, 72918-72963, 72970-72998, 73007-73015, 73020-73025, 73029-73031
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG093

  • OPG093:V14G
  • OPG093:A15N
  • OPG093:Y16F
  • OPG093:F17V
  • OPG093:S18F
Deletions

OPG092

OPG092:13-39, OPG092:61-83
Insertions
N/A

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