PP_000T7TK.2

USA/PP_000T7TK.2
N. Shashan, J. Makarenko, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
USA-2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIb
Outbreak
sh2017
Lineage
A

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Submission details

Submission ID
OK573081.1
Submitting group
Date submitted
2025-02-03 15:01:44 UTC
Date released
2025-02-03 15:04:26 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
504 (55%)
# of SNPs
4
# of deleted bases
108027
# of frame shifts
1
Frame shifts
OPG042:251-425(nt:25823-26347)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • C25368A
  • A25407G
  • G25680A
  • A26341T
Deletions

25682-26334, 26348-26738, 26746-58407, 58416-118996, 119006-132782, 132790-133752
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG040

  • OPG040:E37D
Deletions

OPG042

OPG042:55-250
Insertions
N/A

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