PP_000T7PT.2

USA/PP_000T7PT.2
N. Shashan, J. Makarenko, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
USA-2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIb
Outbreak
sh2017
Lineage
A

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Submission details

Submission ID
OK573077.1
Submitting group
Date submitted
2025-02-03 15:01:44 UTC
Date released
2025-02-03 15:04:26 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
545 (65.7%)
# of SNPs
24
# of inserted bases
1
# of deleted bases
128993
# of frame shifts
4
# of stop codons
1
Frame shifts
OPG080:317-772(nt:59703-61070),OPG081:26-28(nt:62203-62212),OPG081:80(nt:62046-62048),OPG082:291-383(nt:62304-62582)
Stop Codons
OPG082:204

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • A61068G
  • A61632C
  • A62203G
  • C62205G
  • C62210A
  • A62239T
  • A62242T
  • G62245A
  • T62246C
  • C62251T
  • A62252T
  • G62253A
  • A62409G
  • A62430C
  • T62431C
  • A62432G
  • G62434T
  • C62477A
Deletions

61071-61624, 62049-62169, 62175-62202, 62213-62235, 62257-62291, 62300-62406, 62414-62424, 62438-62473, 62480-62542, 62553-62577, 62583-62709, 62724-145634, 145643-190594
Insertions

ins_62041:A

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG080

  • OPG080:D129E

OPG082

  • OPG082:I203C
  • OPG082:E204*
  • OPG082:I205L
Deletions

OPG080

OPG080:133-316

OPG081

OPG081:29-37, OPG081:40-79

OPG082

OPG082:219-290
Insertions
N/A

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