PP_000T7NV.2

USA/PP_000T7NV.2
N. Shashan, J. Makarenko, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
USA-2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIb
Outbreak
sh2017
Lineage
A

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Submission details

Submission ID
OK573076.1
Submitting group
Date submitted
2025-02-03 15:01:44 UTC
Date released
2025-02-03 15:04:26 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
547 (2.44%)
# of SNPs
14
# of inserted bases
1
# of deleted bases
4261
# of frame shifts
1
Frame shifts
OPG178:61-62(nt:151687-151694)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • C151215A
  • C151260T
  • C151263A
  • G151267A
  • A151273C
  • A151450C
  • T151484C
  • A151486C
  • T151613G
  • C151614A
  • T151621A
  • T151699G
  • A151709T
  • A155832C
Deletions

151036-151070, 151075-151212, 151219-151254, 151277-151340, 151345-151446, 151455-151481, 151493-151609, 151623-151686, 151701-151706, 152156-155827
Insertions

ins_151694:T

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG178

  • OPG178:N65I
  • OPG178:L66G
  • OPG178:L67F
Deletions
N/A
Insertions
N/A

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