PP_000T7K1.2

USA/PP_000T7K1.2
N. Shashan, J. Makarenko, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
USA-2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIb
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Submission details

Submission ID
OK573073.1
Submitting group
Date submitted
2025-02-03 15:01:44 UTC
Date released
2025-02-03 15:02:56 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
561 (3.32%)
# of SNPs
21
# of deleted bases
5981
# of frame shifts
2
Frame shifts
OPG064:575-667(nt:43898-44176),OPG064:725-738(nt:43685-43726)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • T43716C
  • C43717A
  • A43719C
  • T43726A
  • C43819A
  • T43822A
  • T43827C
  • T43828C
  • A43829C
  • A43906T
  • T43907C
  • T44159C
  • C44161G
  • G44163A
  • T44167A
  • C44168A
  • T44194G
  • T44196G
Deletions

43727-43814, 43834-43897, 43910-44120, 44127-44155, 44171-44173, 44177-44184, 44669-50246
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG064

  • OPG064:T411A
  • OPG064:Y568S
  • OPG064:I569L
Deletions

OPG064

OPG064:573, OPG064:574, OPG064:668-724
Insertions
N/A

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