PP_000T7J3.2

USA/PP_000T7J3.2
N. Shashan, J. Makarenko, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
USA-2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIb
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Submission details

Submission ID
OK573072.1
Submitting group
Date submitted
2025-02-03 15:01:44 UTC
Date released
2025-02-03 15:02:56 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
563 (2.14%)
# of SNPs
8
# of deleted bases
3666
# of frame shifts
2
Frame shifts
OPG200:73-75(nt:172365-172373),OPG200:99-150(nt:172443-172599)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • A171675G
  • T172246A
  • T172250A
  • C172278A
  • G172281A
  • C172282A
  • T172371A
  • G172445A
Deletions

172087, 172114-172243, 172252-172275, 172285-172364, 172374-172431, 172438-172442, 172450-175817
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG199

  • OPG199:K230E
Deletions

OPG200

OPG200:76-94, OPG200:97, OPG200:98
Insertions
N/A

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