PP_000T7H5.2

USA/PP_000T7H5.2
N. Shashan, J. Makarenko, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
USA-2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIb
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Submission details

Submission ID
OK573071.1
Submitting group
Date submitted
2025-02-03 15:01:44 UTC
Date released
2025-02-03 15:02:56 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
563 (5.98%)
# of SNPs
36
# of inserted bases
7
# of deleted bases
11231
# of frame shifts
3
# of stop codons
1
Frame shifts
OPG056:87-89(nt:38768-38776),OPG056:95-110(nt:38706-38753),OPG056:187-636(nt:37127-38476)
Stop Codons
OPG056:57

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • A38470G
  • C38476G
  • C38689G
  • A38691C
  • G38708T
  • C38712G
  • C38714T
  • A38724C
  • C38728T
  • G38729C
  • G38737A
  • T38744C
  • G38745A
  • G38748A
  • T38751G
  • G38755A
  • A38756C
  • A38759C
Deletions

38477-38684, 38696-38705, 38719-38722, 38731-38735, 38767, 38773, 38777, 38786-38791, 38802-38810, 38834-38869, 39299-50248
Insertions

ins_38753:AATAGTC

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG056

  • OPG056:I56P
  • OPG056:T57*
  • OPG056:I58F
  • OPG056:L59W
  • OPG056:P94S

OPG057

  • OPG057:D301G
Deletions

OPG056

OPG056:65-86, OPG056:90, OPG056:91, OPG056:111-186
Insertions

OPG056

ins_OPG056:59:*WVPSKFA

Report an issue with this sequence or metadata

Create GitHub issue