PP_000T7G8.2

USA/PP_000T7G8.2
N. Shashan, J. Makarenko, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
USA-2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIb
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Submission details

Submission ID
OK573070.1
Submitting group
Date submitted
2025-02-03 15:01:44 UTC
Date released
2025-02-03 15:02:56 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
565 (0.423%)
# of SNPs
2
# of deleted bases
270
# of frame shifts
1
Frame shifts
OPG077:48-49(nt:58439-58442)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • C58461T
  • G58466T
Deletions

58320-58438, 58443-58452, 58468-58503, 58509-58613
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG077

  • OPG077:C38I
  • OPG077:P39K
  • OPG077:Q40K
Deletions

OPG077

OPG077:45-47
Insertions
N/A

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