PP_000T7DE.2

USA/PP_000T7DE.2
N. Shashan, J. Makarenko, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
USA-2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIa
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Submission details

Submission ID
OK573067.1
Submitting group
Date submitted
2025-02-03 15:01:44 UTC
Date released
2025-02-03 15:02:56 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
571 (0.739%)
# of SNPs
3
# of deleted bases
887
# of frame shifts
1
Frame shifts
OPG034:30-31(nt:19914-19918)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • G19963A
  • T19965A
  • G20501T
Deletions

19867-19913, 19919-19958, 19967-20033, 20582-21314
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG034

  • OPG034:M1F
Deletions

OPG034

OPG034:6-29
Insertions

OPG034

ins_OPG034:0:L

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