PP_000T79N.2

USA/PP_000T79N.2
N. Shashan, J. Makarenko, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
USA-2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIa
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Submission details

Submission ID
OK573063.1
Submitting group
Date submitted
2025-02-03 15:01:44 UTC
Date released
2025-02-03 15:03:26 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
593 (0.449%)
# of SNPs
5
# of deleted bases
293
# of frame shifts
2
Frame shifts
OPG064:77-81(nt:45657-45670),OPG064:96-738(nt:43685-45613)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • A45660G
  • G45666T
  • A45669T
  • G45721T
  • T45966A
Deletions

45614-45617, 45623-45656, 45671-45720, 45728-45929, 45971, 45972, 45980
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions
N/A
Deletions

OPG064

OPG064:61-76, OPG064:82-95
Insertions
N/A

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