PP_000T78Q.1

USA/PP_000T78Q.1
N. Shashan, J. Makarenko, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
USA-2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
II
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30

Submission details

Submission ID
OK573062.1
Submitting group
Date submitted
2024-12-09 18:47:55 UTC
Date released
2024-12-09 18:50:44 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
602 (0.449%)
# of SNPs
4
# of deleted bases
283
# of frame shifts
1
Frame shifts
OPG085:444-592(nt:66756-67202)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • A67491T
  • C67492G
  • T67827C
  • T68084A
Deletions

67203-67485
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG085

  • OPG085:I150L
  • OPG085:C347S
Deletions

OPG085

OPG085:350-443
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue