PP_000T76U.2

USA/PP_000T76U.2
N. Shashan, J. Makarenko, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
USA-2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIb
Outbreak
sh2017
Lineage
A

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Submission details

Submission ID
OK573060.1
Submitting group
Date submitted
2025-02-03 15:01:44 UTC
Date released
2025-02-03 15:03:26 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
624 (60.9%)
# of SNPs
6
# of deleted bases
119412
# of frame shifts
1
Frame shifts
OPG064:264-738(nt:43685-45111)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • A44092T
  • T44715G
  • C44716T
  • T44720C
  • T44888G
  • C49046G
Deletions

43851-44087, 44097-44708, 44722-44879, 44890-45033, 45038-45103, 45112-45533, 45539-46259, 46268-47255, 47267-49041, 49053-64591, 64603-121424, 121431-135514, 135522-148261, 148270-163373
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG068

  • OPG068:I282M
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue