PP_000T75W.2

USA/PP_000T75W.2
N. Shashan, J. Makarenko, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
USA-2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
II
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Submission details

Submission ID
OK573059.1
Submitting group
Date submitted
2025-02-03 15:01:44 UTC
Date released
2025-02-03 15:03:26 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
635 (0.897%)
# of SNPs
25
# of deleted bases
1133

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • G174230C
  • T174231C
  • A174255C
  • G174258T
  • A174307G
  • A174311C
  • A174325C
  • A174372G
  • C174373G
  • C174374A
  • A174411C
  • A174415T
  • C174417G
  • G174418A
  • A174419G
  • T174426G
  • A174427C
  • A174428T
Deletions

174238-174252, 174260-174305, 174316-174320, 174327-174367, 174379-174408, 174440-174465, 174477-174520, 174527-174605, 175141-175239, 175243-175990
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG204

  • OPG204:N178K
  • OPG204:K204S
Deletions
N/A
Insertions
N/A

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