PP_000T74Y.2

USA/PP_000T74Y.2
N. Shashan, J. Makarenko, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
USA-2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
unassigned
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Submission details

Submission ID
OK573058.1
Submitting group
Date submitted
2025-02-03 15:01:44 UTC
Date released
2025-02-03 15:03:26 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
640 (0.405%)
# of SNPs
17
# of deleted bases
159
# of frame shifts
2
Frame shifts
OPG148:403-404(nt:127191-127196),OPG149:8-188(nt:127216-127759)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • A127004C
  • C127008G
  • G127010T
  • T127014G
  • C127146A
  • T127149G
  • A127155G
  • T127161G
  • T127164C
  • T127167G
  • A127170G
  • T127173G
  • A127174T
  • A127175T
  • C127176T
  • G127179A
  • C127218T
Deletions

127018-127143, 127156-127158, 127180-127190, 127197-127215
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG148

  • OPG148:K340T
  • OPG148:G342V
  • OPG148:K345L
  • OPG148:C394W
  • OPG148:N396K
  • OPG148:N397F
Deletions

OPG148

OPG148:346-377, OPG148:381-391, OPG148:399-402, OPG148:405-410

OPG149

OPG149:2-7
Insertions
N/A

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