PP_000T722.1

USA/PP_000T722.1
N. Shashan, J. Makarenko, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
USA-2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIb
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30

Submission details

Submission ID
OK573056.1
Submitting group
Date submitted
2024-12-09 18:47:55 UTC
Date released
2024-12-09 18:50:13 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
646 (0.844%)
# of SNPs
44
# of inserted bases
2
# of deleted bases
1020

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • A172188G
  • T172524C
  • T172645C
  • T172646C
  • A172658C
  • A172679G
  • A172680G
  • T172719G
  • T172721G
  • A172725G
  • T172726A
  • T172727C
  • G172753T
  • C172755T
  • A172759T
  • T172764A
  • C172765T
  • C172768A
Deletions

172649-172652, 172660-172676, 172684-172708, 172712-172717, 172732-172740, 172747-172749, 172761, 172762, 172771-172787, 172797-172831, 172854-172862, 172867-172889, 172900-172904, 172920-172949, 172959-172987, 173000-173034, 173044-173058, 173064-173819
Insertions

ins_172897:CC

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions
N/A
Deletions
N/A
Insertions
N/A

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