PP_000T6YA.2

USA/PP_000T6YA.2
N. Shashan, J. Makarenko, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
USA-2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
II
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Submission details

Submission ID
OK573052.1
Submitting group
Date submitted
2025-02-03 15:01:44 UTC
Date released
2025-02-03 15:02:56 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
683 (0.375%)
# of SNPs
9
# of deleted bases
56
# of frame shifts
1
Frame shifts
OPG190:166(nt:165615-165619)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • G165591T
  • A165641G
  • T165647G
  • T165695A
  • A165767T
  • G165800C
  • A165801C
  • T165819C
  • C165873A
Deletions

165593-165614, 165620-165639, 166103-166116
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG190

  • OPG190:N174D
  • OPG190:W176G
  • OPG190:S192T
  • OPG190:T216S
  • OPG190:D227P
  • OPG190:I233T
  • OPG190:P251H
Deletions

OPG190

OPG190:167-173
Insertions
N/A

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