PP_000T6XC.2

USA/PP_000T6XC.2
N. Shashan, J. Makarenko, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
USA-2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
II
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Submission details

Submission ID
OK573051.1
Submitting group
Date submitted
2025-02-03 15:01:44 UTC
Date released
2025-02-03 15:02:56 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
684 (0.347%)
# of SNPs
3
# of deleted bases
1
# of frame shifts
1
Frame shifts
OPG037:442-443(nt:21105-21110)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • A20644G
  • A20990T
  • C21276A
Deletions

21111
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG036

  • OPG036:D25E
  • OPG036:S141P
Deletions
N/A
Insertions
N/A

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