PP_000T6QS.2

USA/PP_000T6QS.2
N. Shashan, J. Makarenko, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
USA-2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIa
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Submission details

Submission ID
OK573044.1
Submitting group
Date submitted
2025-02-03 15:01:44 UTC
Date released
2025-02-03 15:02:56 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
805 (0.613%)
# of SNPs
10
# of inserted bases
1
# of deleted bases
404
# of frame shifts
1
Frame shifts
OPG195:70-222(nt:168435-168895)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • T167656G
  • T167858C
  • A168277C
  • T168345A
  • G168369A
  • A168497G
  • C168567T
  • C168622A
  • T168624A
  • G168647A
Deletions

168371-168385, 168389-168415, 168422-168434, 168440-168494, 168500-168565, 168572-168618, 168629-168644, 168653-168817
Insertions

ins_168181:A

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG193

  • OPG193:I108R

OPG195

  • OPG195:I39N
  • OPG195:R47K
  • OPG195:T48H
Deletions

OPG195

OPG195:49-62, OPG195:65-69
Insertions
N/A

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