PP_000T6PU.2

USA/PP_000T6PU.2
N. Shashan, J. Makarenko, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
USA-2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
II
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Submission details

Submission ID
OK573043.1
Submitting group
Date submitted
2025-02-03 15:01:44 UTC
Date released
2025-02-03 15:02:25 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
848 (0.431%)
# of SNPs
3
# of deleted bases
1
# of frame shifts
1
Frame shifts
OPG064:405-738(nt:43685-44686)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • T44688G
  • T44689A
  • A44695G
Deletions

44687
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG064

  • OPG064:W402R
  • OPG064:N404S
Deletions
N/A
Insertions
N/A

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