PP_000T6MY.1

USA/PP_000T6MY.1
N. Shashan, J. Makarenko, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
USA-2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIa
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30

Submission details

Submission ID
OK573041.1
Submitting group
Date submitted
2024-12-09 18:47:55 UTC
Date released
2024-12-09 18:50:44 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
911 (0.592%)
# of SNPs
3
# of deleted bases
256
# of frame shifts
1
Frame shifts
OPG082:50-383(nt:62304-63305)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • G63301T
  • C63568T
  • G64427A
Deletions

63306-63351, 63354-63563
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG083

  • OPG083:T97M
Deletions

OPG082

OPG082:30-49
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue