PP_000T6FB.2

USA/PP_000T6FB.2
N. Shashan, J. Makarenko, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
USA-2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIa
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Submission details

Submission ID
OK573035.1
Submitting group
Date submitted
2025-02-03 15:01:44 UTC
Date released
2025-02-03 15:02:56 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
1164 (1.27%)
# of SNPs
25
# of deleted bases
1339
# of frame shifts
3
Frame shifts
OPG165:22-37(nt:143577-143626),OPG165:86-269(nt:143769-144322),OPG167:160-278(nt:144574-144931)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • T143507C
  • T143508A
  • A143529G
  • A143535T
  • G143536T
  • A143537G
  • T143540G
  • T143541G
  • C143542G
  • T143545C
  • T143584C
  • A143585T
  • T143587C
  • A143623C
  • T143753A
  • A143770G
  • G143775A
  • T143778A
Deletions

143512-143527, 143546-143576, 143591-143621, 143627-143747, 143756-143768, 143780-143786, 143797, 143798, 143805-143858, 144932-145002, 145007-145999
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions
N/A
Deletions

OPG165

OPG165:38-85
Insertions
N/A

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