PP_000T6ED.2

USA/PP_000T6ED.2
N. Shashan, J. Makarenko, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
USA-2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIb
Outbreak
sh2017
Lineage
A

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Submission details

Submission ID
OK573034.1
Submitting group
Date submitted
2025-02-03 15:01:44 UTC
Date released
2025-02-03 15:02:56 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
1184 (15.4%)
# of SNPs
7
# of deleted bases
29222
# of frame shifts
1
Frame shifts
OPG111:152-315(nt:90717-91209)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • T89551G
  • C89552T
  • T89579G
  • C89607T
  • G89869A
  • G90034A
  • A90719G
Deletions

89515-89548, 90707-90716, 90721-90898, 90906-90920, 90925-119909
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG110

  • OPG110:V80I
  • OPG110:A135T
Deletions

OPG111

OPG111:149-151
Insertions
N/A

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