PP_000T6DF.1

USA/PP_000T6DF.1
N. Shashan, J. Makarenko, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
USA-2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIa
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30

Submission details

Submission ID
OK573033.1
Submitting group
Date submitted
2024-12-09 18:47:55 UTC
Date released
2024-12-09 18:50:44 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
1260 (0.749%)
# of SNPs
34
# of inserted bases
2
# of deleted bases
219
# of frame shifts
2
Frame shifts
OPG003:504-549(nt:2963-3098),OPG003:560-561(nt:2925-2931)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • T2792C
  • C2804G
  • T2807G
  • A2809C
  • G2814C
  • G2871A
  • T2872G
  • G2919A
  • A2925C
  • A2939T
  • A2940G
  • A2977C
  • T2988A
  • G2989A
  • T2991A
  • T2992G
  • C3015A
  • C3018T
Deletions

2798, 2799, 2810, 2818-2869, 2877-2918, 2932-2936, 2946-2962, 2967-2974, 2980-2985, 2997-3014, 3033-3059, 3072-3090, 3099-3120
Insertions

ins_2924:TT

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG003

  • OPG003:S319P
  • OPG003:D437Y
  • OPG003:R495S
  • OPG003:T496A
Deletions

OPG003

OPG003:497-503, OPG003:550-554, OPG003:556-559
Insertions
N/A

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