PP_000T6CH.2

USA/PP_000T6CH.2
N. Shashan, J. Makarenko, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
USA-2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIb
Outbreak
sh2017
Lineage
A

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Submission details

Submission ID
OK573032.1
Submitting group
Date submitted
2025-02-03 15:01:44 UTC
Date released
2025-02-03 15:02:56 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
1360 (46.4%)
# of SNPs
7
# of deleted bases
90068
# of frame shifts
2
Frame shifts
OPG124:284-288(nt:105105-105119),OPG125:186-257(nt:106886-107099)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • A105093T
  • G105522A
  • T106115C
  • G106460T
  • A106808T
  • T107097G
  • A196507C
Deletions

105097-105115, 105120-105490, 106809-106885, 106892-107094, 107100-107320, 107327-196503
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG125

  • OPG125:L399I
  • OPG125:I514V
Deletions

OPG124

OPG124:161-283

OPG125

OPG125:113-185, OPG125:258-283
Insertions
N/A

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