PP_000T64Z.1

USA/PP_000T64Z.1
N. Shashan, J. Makarenko, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
USA-2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
II
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30

Submission details

Submission ID
OK573024.1
Submitting group
Date submitted
2024-12-09 18:47:55 UTC
Date released
2024-12-09 18:50:13 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
2100 (1.2%)
# of SNPs
27
# of inserted bases
9
# of deleted bases
276

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • C41T
  • A64C
  • A93T
  • A96T
  • T113C
  • A114C
  • T117G
  • T119C
  • G124C
  • T128A
  • G132T
  • G144T
  • A147T
  • A148C
  • A150C
  • C152G
  • T154G
  • T178A
Deletions

43-62, 68-88, 98-111, 134-142, 158-163, 172-175, 181-200, 203-212, 220-252, 256-260, 273-280, 286-302, 308-370, 377-406, 415-423, 603-609
Insertions

ins_119:CCG, ins_126:GCTGGA

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG002

  • OPG002:N313T
Deletions
N/A
Insertions
N/A

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