PP_000T623.2

USA/PP_000T623.2
N. Shashan, J. Makarenko, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
USA-2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIb
Outbreak
None
Lineage
None

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Submission details

Submission ID
OK573022.1
Submitting group
Date submitted
2025-02-03 15:01:44 UTC
Date released
2025-02-03 15:02:56 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
2884 (4.95%)
# of SNPs
69
# of inserted bases
8
# of deleted bases
6880
# of frame shifts
1
Frame shifts
OPG176:211-228(nt:150438-150492)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • T147860C
  • A147926T
  • A148124G
  • G148126A
  • G148205A
  • C148542T
  • G149765T
  • G149878A
  • C150386A
  • C150443A
  • T150444A
  • A150446G
  • G150449A
  • C150491G
  • C150500G
  • T150501A
  • T150506A
  • A150507C
Deletions

150388-150437, 150451-150485, 150493-150497, 150511-150546, 150554-150660, 150665-150692, 150697-150713, 150720-150726, 150734-150756, 150767-150774, 150781-150808, 150826-150855, 150872, 150877-150888, 150918-150955, 150968, 150986, 150990-151028, 151032-151034, 151046-151153, 151176-151184, 151196-156881, 156888-157495
Insertions

ins_148351:A, ins_150896:ACC, ins_150909:GG, ins_151167:C, ins_151169:C

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG172

  • OPG172:M145T
  • OPG172:D167V

OPG173

  • OPG173:T30A
  • OPG173:E57K

OPG174

  • OPG174:C285Y

OPG176

  • OPG176:D24N
  • OPG176:P193Q
Deletions

OPG176

OPG176:194-210, OPG176:229-240
Insertions

OPG176

ins_OPG176:241:ADI

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