PP_000T5RR.2

USA/PP_000T5RR.2
N. Shashan, J. Makarenko, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Sampling location
USA (MD)
Isolate name
USA-2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-12-09 18:48insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIb
Outbreak
sh2017
Lineage
A

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2022-07-30
NCBI update date
2022-07-30
Raw reads accession

Submission details

Submission ID
OK573017.1
Submitting group
Date submitted
2025-02-03 15:01:44 UTC
Date released
2025-02-03 15:02:56 UTC
Earliest release date
2022-07-30

Alignment and QC

Length
4917 (36.7%)
# of SNPs
26
# of deleted bases
67366
# of frame shifts
3
Frame shifts
OPG130:24-40(nt:111785-111834),OPG132:307-308(nt:112618-112622),OPG132:331-373(nt:112422-112552)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • G107232A
  • G107366T
  • C107394T
  • C107921T
  • T108250C
  • A109382G
  • G109580A
  • T111566C
  • A111721T
  • A111787T
  • T111790G
  • C111791G
  • G111832A
  • G111878T
  • T112234G
  • C112235T
  • A112518C
  • T112520A
Deletions

111568-111717, 111727-111784, 111797-111827, 111835-111874, 111882-112227, 112243-112514, 112525-112546, 112553-112577, 112587-112617, 112623-112705, 112721-114116, 114124-117317, 117329-133068, 133073-179050
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG125

  • OPG125:H97N

OPG130

  • OPG130:L101S
  • OPG130:S110N
  • OPG130:S111K
  • OPG130:D112I
  • OPG130:M113V

OPG131

  • OPG131:S99V

OPG132

  • OPG132:I261Y
Deletions

OPG130

OPG130:41-100

OPG132

OPG132:262-306, OPG132:309-330
Insertions
N/A

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