PP_000RXR3.2

Display Name: Hungary/PP_000RXR3.2/2024
A. Nagy

Sample details

Collection date
2024
Collection date (lower bound)
2024-01-01
Collection date (upper bound)
2024-10-23
Collection subdivision level 1
Doc
Isolate name
7894_2024_WNV_HU
Collection country
Hungary

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-10-24 02:16insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
2

Authors

Author affiliations
National Center for Public Health and Pharmacy, National Reference Laboratory for Viral Zoonoses

INSDC

NCBI release date
2024-10-23
NCBI update date
2024-10-23
INSDC accession

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Total stop codons
0
Length
423
Total SNPs
83
Total inserted nucs
0
Total deleted nucs
107
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
1
Frame shifts
NS3:204-619(nt:5220-6468)
Completeness
4.81%

Submission details

Submission ID
PQ381112.1
Submitting group
Date submitted
2024-10-29 17:09:23 UTC
Date released
2024-10-29 17:17:47 UTC
Earliest release date
2024-10-23

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G5112A
  • T5223A
  • G5226T
  • A5229C
  • G5232A
  • A5241G
  • A5250C
  • G5255A
  • C5260T
  • A5265G
  • A5268G
  • C5271T
  • G5274A
  • A5277G
  • G5280A
  • A5283C
  • T5292C
  • G5295T
    • Deletions
    5113-5219
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions
    Deletions
    NS3:168-203
    Insertions
    None

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