PP_000RXMB.2

Display Name: Hungary/PP_000RXMB.2/2024-01-01
Nagy, A.

Submission details

Submission ID
PQ381108.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-10-29 17:09:23 UTC
Date released
2024-10-29 17:17:47 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-10-24 02:16insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
National Center for Public Health and Pharmacy, National Reference Laboratory for Viral Zoonoses

Alignment states and QC metrics

Completeness
3.80%
Length
420
Total ambiguous nucs
1
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
82
Total stop codons
0
Total unknown nucs
0

Sample details

Collection subdivision level 1
Budapest
Collection country
Hungary
Collection date
2024-01-01
Isolate name
6939_2024_WNV_HU

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession
PQ381108.1
NCBI release date
2024-10-23
NCBI update date
2024-10-23

Lineage

Lineage
2

Nucleotide mutations

Substitutions

  • G5219A
  • T5223A
  • G5226T
  • A5229C
  • G5232A
  • A5241G
  • A5250C
  • G5255A
  • C5260T
  • A5265G
  • A5268G
  • C5271T
  • G5274A
  • A5277G
  • G5280A
  • A5283C
  • T5292C
  • G5295T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Substitutions

    NS3

  • NS3:R203K
  • NS3:R215K
  • NS3:A233S
  • NS3:N253S
  • NS3:V283I
  • NS3:S302A
  • NS3:S331A
  • NS3:L336M
    • Deletions
    None
    Insertions
    None