PP_000RH3U.2

Display Name: USA/PP_000RH3U.2/2023-08-20
E. H. Davis, J. Velez & H. R. Hughes

Sample details

Collection date
2023-08-20
Collection date (lower bound)
2023-08-20
Collection date (upper bound)
2023-08-20
Collection subdivision level 1
Nebraska
Isolate name
135322a-L1
Collection country
USA

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-10-14 02:31insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
1A

Authors

Author affiliations
Centers for Disease Control and Prevention, Arboviral Diseases Branch

INSDC

NCBI release date
2024-10-13
NCBI update date
2024-10-13
INSDC accession

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Total stop codons
0
Length
11008
Total SNPs
106
Total inserted nucs
5
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
99.76%

Submission details

Submission ID
PP445211.1
Submitting group
Date submitted
2024-10-29 17:09:23 UTC
Date released
2024-10-29 17:17:47 UTC
Earliest release date
2024-10-13

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C55T
  • C62T
  • A89G
  • A288G
  • C340T
  • C435T
  • A525T
  • A630G
  • T642C
  • C1308T
  • C1395T
  • T1442C
  • C1465T
  • C1473T
  • G1662A
  • C1750T
  • C2040T
  • C2109T
    • Deletions
    None
    Insertions
    ins_11029:AACAC

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS3

  • NS3:V115A
  • NS3:E182D

    • NS4B

  • NS4B:I240M

    • NS5

  • NS5:S277R
  • NS5:K432R

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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