PP_000RH3U.2

USA/135322a-L1/2023-08-20
E. H. Davis, J. Velez & H. R. Hughes

Centers for Disease Control and Prevention, Arboviral Diseases Branch

Sample details

Collection date
2023-08-20
Sampling location
USA (Nebraska)
Isolate name
135322a-L1

Data use terms

Data use terms
OPEN
Data use terms URL

Lineage

Lineage
1A

INSDC

INSDC accession
NCBI release date
2024-10-13
NCBI update date
2024-10-13

Host

Host

Submission details

Submission ID
PP445211.1
Submitting group
Date submitted
2024-10-29 17:09:23 UTC
Date released
2024-10-29 17:17:47 UTC
Earliest release date
2024-10-13

Cited in

Alignment and QC

Length
11008 (99.8%)
# of SNPs
106
# of inserted bases
5

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • C55T
  • C62T
  • A89G
  • A288G
  • C340T
  • C435T
  • A525T
  • A630G
  • T642C
  • C1308T
  • C1395T
  • T1442C
  • C1465T
  • C1473T
  • G1662A
  • C1750T
  • C2040T
  • C2109T
Deletions
N/A
Insertions
ins_11029:AACAC

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS3

  • NS3:V115A
  • NS3:E182D

NS4B

  • NS4B:I240M

NS5

  • NS5:S277R
  • NS5:K432R

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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