PP_000RH1Y.2

Display Name: Guinea/PP_000RH1Y.2/2022-04-08
E. V. Naidenova, Y. M. Krasnov, K. S. Zakharov, D. A. Agafonov, A. M. Senichkina, N. P. Guseva, S. D. Katyshev, G. A. Gurkin, M. Y. Kartashov, A. V. Shipovalov, A. S. Kabanov, S. Boumbaly, M. G. Diallo & M. B. Bah

Submission details

Submission ID
PQ361725.1.S
Submitting group
Date submitted
2024-10-29 17:10:51 UTC
Date released
2024-10-29 17:15:40 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-10-03 02:19insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Russian Antiplague Research Institute 'Microbe', Microbiology

Alignment and QC metrics S

Completeness S
99.28%
Length S
1662
Total ambiguous nucs S
0
Total deleted nucs S
18
Total frame shifts S
0
Total inserted nucs S
19
Total SNPs S
239
Total unknown nucs S
1

Sample details

Earliest release date
2024-10-02
Collection subdivision level 1
N'Zerekore
Collection country
Guinea
Collection date
2022-04-08
Collection date (lower bound)
2022-04-08
Collection date (upper bound)
2022-04-08
Isolate name
5542

Host

Host name - scientific
Rhipicephalus geigyi
Host taxon ID

INSDC

INSDC accession S
NCBI release date
2024-10-02

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:G8T
  • S:C14A
  • S:G20T
  • S:T46A
  • S:T49C
  • S:A50T
  • S:G54A
  • S:T79C
  • S:A81G
  • S:G99A
  • S:G100A
  • S:C115T
  • S:A121G
  • S:G134A
  • S:C139T
  • S:C142T
  • S:T157C
  • S:C166T
    • Deletions
    S:1542-1547, S:1573, S:1574, S:1610-1619
    Insertions
    ins_S:1563:TATG, ins_S:1629:CTATCTTTCA, ins_S:1579:ATC, ins_S:1566:AT

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:N9S
  • NP:R15K
  • NP:V27M
  • NP:S39N
  • NP:R45K
  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:T124A
  • NP:G125N
  • NP:P192L
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:K265R
  • NP:R270K
  • NP:S301G
  • NP:A307P
    • Deletions
    None
    Insertions
    None

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