PP_000RH00.2

Guinea/PP_000RH00.2/2022-04-04
E. V. Naidenova, Y. M. Krasnov, K. S. Zakharov, D. A. Agafonov, A. M. Senichkina, N. P. Guseva, S. D. Katyshev, G. A. Gurkin, M. Y. Kartashov, A. V. Shipovalov, A. S. Kabanov, S. Boumbaly, M. G. Diallo & M. B. Bah

Russian Antiplague Research Institute 'Microbe', Microbiology

Sample details

Collection date
2022-04-04
Sampling location
Guinea (Gueckedou)
Isolate name
5541

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-10-03 02:19insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession S
NCBI release date
2024-10-02

Host

Host

Submission details

Submission ID
PQ361724.1.S
Submitting group
Date submitted
2024-10-29 17:10:51 UTC
Date released
2024-10-29 17:15:40 UTC
Earliest release date
2024-10-02

Lineage

Segment S Lineage
V

Alignment and QC

Length S
1653 (98.7%)
# of SNPs S
265
# of inserted bases S
1
# of unknown bases S
1

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • G20T
  • T46A
  • T49C
  • A50T
  • G54A
  • T79C
  • A81G
  • G99A
  • G100A
  • A109G
  • C115T
  • A121G
  • G134A
  • C142T
  • T157C
  • C166T
  • G171A
  • T175A
Deletions
N/A
Insertions

S

ins_1579:C

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

NP

  • NP:N9S
  • NP:R15K
  • NP:V27M
  • NP:S39N
  • NP:R45K
  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:T124A
  • NP:G125N
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:K265R
  • NP:R270K
  • NP:S301G
  • NP:A307P
  • NP:Y311F
Deletions
N/A
Insertions
N/A

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