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Crimean-Congo Hemorrhagic Fever Virus
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PP_000RFMT.3
Version 3
PP_000RFMT.1
Previous version
PP_000RFMT.2
Previous version
PP_000RFMT.3
Latest version
All versions
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Download FASTA
Download metadata TSV
Display Name: North_Macedonia/PP_000RFMT.3/2024
D. Jakimovski,
P. Banovic,
B. Zana,
A. Abraham,
Z. Lanszki,
T. Gorfol,
Z. Tauber,
A. Kuczmog,
K. Banyai &
G. Kemenesi
Sample details
Collection date
2024
Country
North Macedonia
Isolate name
Arachinovo/North Macedonia-1/2024
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2024-08-27 12:11
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
University of Pecs, Szentagothai Research Center
INSDC
INSDC accession L
PQ031238.1
INSDC accession M
PQ031239.1
INSDC accession S
PQ031240.1
NCBI release date
2024-07-24
Host
Host taxon ID
9606
Host name - scientific
Homo sapiens
Alignment and QC metrics L
Length L
10540
Completeness L
45.04%
# of SNPs L
593
# of inserted bases L
0
# of deleted bases L
0
# of ambiguous bases L
0
# of unknown bases L
5087
# of frame shifts L
0
# of stop codons L
0
Alignment and QC metrics M
Length M
4974
Completeness M
84.25%
# of SNPs M
852
# of inserted bases M
0
# of deleted bases M
3
# of ambiguous bases M
0
# of unknown bases M
456
# of frame shifts M
0
# of stop codons M
0
Alignment and QC metrics S
Length S
1306
Completeness S
78.11%
# of SNPs S
181
# of inserted bases S
0
# of deleted bases S
0
# of ambiguous bases S
0
# of unknown bases S
0
# of frame shifts S
0
# of stop codons S
0
Submission details
Submission ID
PQ031238.1.L/PQ031239.1.M/PQ031240.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-10-29 17:10:51 UTC
Date released
2024-10-29 17:15:40 UTC
Earliest release date
2024-07-24
Lineage
Segment S Lineage
V
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
C
805
T
L:
T
814
C
L:
A
817
G
L:
G
823
A
L:
T
826
C
L:
C
835
T
L:
T
845
C
L:
A
847
G
L:
T
853
C
L:
G
880
A
L:
A
892
C
L:
A
900
G
L:
C
904
T
L:
A
911
G
L:
T
929
C
L:
G
931
A
L:
T
937
C
L:
C
941
T
Show more
M
M:
G
50
A
M:
A
51
G
M:
T
67
C
M:
T
68
C
M:
A
69
G
M:
T
71
A
M:
C
74
T
M:
G
76
C
M:
A
80
G
M:
T
83
C
M:
G
84
A
M:
T
86
C
M:
C
92
T
M:
T
100
C
M:
T
102
C
M:
C
103
T
M:
A
108
G
M:
A
112
G
Show more
S
S:
T
49
C
S:
A
50
T
S:
G
54
A
S:
T
79
C
S:
A
81
G
S:
G
99
A
S:
G
100
A
S:
A
109
G
S:
C
115
T
S:
A
121
G
S:
G
134
A
S:
C
142
T
S:
T
157
C
S:
C
166
T
S:
G
169
A
S:
G
171
A
S:
T
175
A
S:
C
178
A
Show more
Deletions
M:333-335
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
I
3
T
GPC:
S
4
L
GPC:
M
6
V
GPC:
Y
7
C
GPC:
A
8
F
GPC:
C
11
Y
GPC:
C
15
L
GPC:
E
19
G
GPC:
T
20
A
GPC:
S
23
Q
GPC:
H
24
S
GPC:
E
26
A
GPC:
R
28
E
GPC:
K
31
G
GPC:
D
33
N
GPC:
M
35
T
GPC:
T
37
A
GPC:
D
40
T
Show more
NP
NP:
N
9
S
NP:
R
15
K
NP:
V
27
M
NP:
S
39
N
NP:
R
45
K
NP:
A
100
S
NP:
S
109
N
NP:
T
111
A
NP:
T
124
A
NP:
G
125
N
NP:
G
185
S
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
K
265
R
NP:
R
270
K
NP:
S
301
G
NP:
A
307
P
Show more
RdRp
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
V
352
I
RdRp:
S
427
N
RdRp:
G
449
D
RdRp:
N
453
S
RdRp:
I
505
T
RdRp:
A
508
I
RdRp:
K
522
R
RdRp:
A
719
V
RdRp:
R
764
K
RdRp:
K
769
E
RdRp:
R
770
K
RdRp:
D
771
E
RdRp:
P
774
L
RdRp:
E
776
G
RdRp:
I
783
A
RdRp:
T
784
V
Show more
Deletions
GPC:77
Insertions
None
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