PP_000RFLV.2

North_Macedonia/PP_000RFLV.2/2024
D. Jakimovski, P. Banovic, B. Zana, A. Abraham, Z. Lanszki, T. Gorfol, Z. Tauber, A. Kuczmog, K. Banyai & G. Kemenesi

University of Pecs, Szentagothai Research Center

Sample details

Collection date
2024
Sampling location
North Macedonia
Isolate name
Kriva Palanka/North Macedonia-1/2024

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-08-27 12:11insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession L
INSDC accession M
INSDC accession S
NCBI release date
2024-07-24

Host

Host

Submission details

Submission ID
PQ031236.1.L/PQ031235.1.M/PQ031237.1.S
Submitting group
Date submitted
2024-09-26 15:01:57 UTC
Date released
2024-09-26 15:22:15 UTC
Earliest release date
2024-07-24

Lineage

Segment S Lineage
V

Alignment and QC

Length S
1649 (98.6%)
# of SNPs S
254
# of inserted bases S
1
Length M
5341 (99.6%)
# of SNPs M
1024
# of inserted bases M
1
# of deleted bases M
3
Length L
12138 (97.3%)
# of SNPs L
1294
# of inserted bases L
41
# of unknown bases L
314

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • G23T
  • C31A
  • A35G
  • A42T
  • G43C
  • T49C
  • A53G
  • T58C
  • C59T
  • C63T
  • C64G
  • T66C
  • A72G
  • A73C
  • A91G
  • G93A
  • C100T
  • A109G

M

  • T40A
  • G50A
  • A51G
  • T59C
  • T67C
  • T68C
  • A69G
  • T71A
  • G76C
  • A80G
  • T83C
  • G84A
  • T86C
  • C92T
  • T100C
  • T102C
  • C103T
  • A108G

S

  • T49C
  • A50T
  • G54A
  • G67A
  • T79C
  • A81G
  • G99A
  • G100A
  • A109G
  • C115T
  • A121G
  • G134A
  • C142T
  • T157C
  • C166T
  • G171A
  • T175A
  • C178A
Deletions

M

333-335
Insertions

L

ins_67:C, ins_11924:G, ins_12092:CTATTCATTCCTGTTTCATTATTTGAAGGGTGTGGGGGG

M

ins_5171:C

S

ins_1577:A

Amino acid mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:I3T
  • GPC:S4L
  • GPC:M6V
  • GPC:Y7C
  • GPC:A8F
  • GPC:C11Y
  • GPC:C15L
  • GPC:E19G
  • GPC:T20A
  • GPC:S23Q
  • GPC:H24S
  • GPC:E26A
  • GPC:R28E
  • GPC:K31G
  • GPC:D33N
  • GPC:M35T
  • GPC:T37A
  • GPC:D40T

NP

  • NP:N9S
  • NP:R15K
  • NP:V27M
  • NP:S39N
  • NP:R45K
  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:T124A
  • NP:G125N
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:K265R
  • NP:R270K
  • NP:S301G
  • NP:A307P
  • NP:Y311F

RdRp

  • RdRp:S6N
  • RdRp:S19T
  • RdRp:D55A
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67L
  • RdRp:K71R
  • RdRp:R80K
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:K218R
  • RdRp:K275R
  • RdRp:I279V
  • RdRp:V352I
  • RdRp:N453S
  • RdRp:I505T
Deletions

GPC

GPC:77
Insertions
N/A

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