PP_000RFJZ.3

North_Macedonia/PP_000RFJZ.3/2023

G. Bosevska, P. Emmerich, R. von Possel, E. G. Toth, D. Osmani & D. Cadar

Bernhard Nocht Institute for Tropical Medicine, Virus Genomics and Evolution

Sample details

Collection date

2023

Sampling location

North Macedonia

Isolate name

Kuchica-2713

Data use terms

Changed	User	Data use terms
2024-08-27 12:11	insdc_ingest_user	OPEN

OPEN

Data use terms URL

https://pathoplexus.org/about/terms-of-use/open-data

Lineage

Segment S Lineage

INSDC

INSDC accession L

PP963968.1

INSDC accession M

PP963969.1

INSDC accession S

PP963970.1

NCBI release date

2024-07-06

Host

human (Homo sapiens)

Submission details

Submission ID

PP963968.1.L/PP963969.1.M/PP963970.1.S

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2024-10-29 17:10:51 UTC

Date released

2024-10-29 17:15:40 UTC

Earliest release date

2024-07-06

Alignment and QC

Length L

12347 (100%)

# of SNPs L

1298

# of inserted bases L

239

Length S

1814 (100%)

# of SNPs S

267

# of inserted bases S

142

Length M

5388 (100%)

# of SNPs M

1066

# of inserted bases M

# of deleted bases M

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

T10C
A35G
A42T
G43C
T49C
A53G
C59T
C63G
C64T
T65C
T67C
A72G
A73T
A91G
G93A
C100T
A109G
T131A

M

C2A
T3G
A5G
A7C
G8C
A9T
A10C
A11C
T12A
A13C
T40C
G50A
A51G
A61T
T67C
T68C
T71A
G76C

S

T1C
C2A
A5T
A7G
G8C
A9G
A11C
A13T
T16A
G17C
C19A
G20T
T23A
A24G
C27A
T49C
A50T
G54A

Deletions

M

333-335

Insertions

L

ins_0:GACCATCTAGCGACCTCCACTTCAGTCACTGGCTGCAACAGTCCAAATGATTATTGTAATGCCCATTTCTTTGGCTAGCATGGATG, ins_25:T, ins_57:AT, ins_11928:CG, ins_12092:CTATTCATACCAGTTTTATTATTTGAAGGGTATGGGGGG, ins_12108:AATGCAGAGCAGCTAGCTCGTTTGAGAGCTTTGATGCTGGCAACTACTATGGTATAGACTGTCTCGTTTGCCCTTGGGACATTGAAAGACAGTGGAGGTCGCTAGATGG

M

ins_0:CATC, ins_5171:T, ins_5366:GTGGAGGTCGCTAGATGGTC

S

ins_0:GAC, ins_29:TCC, ins_1577:A, ins_1672:ATGGACTTGGTATGTCCAGATCCCTGAGCAGCGTCATCAGGATTGGCAACAGGGATTGTTCCAAAGCAGACACCCATTTCACTGATTCTACCGGCTGTCAACACAGCAGGGTGCATGTAGATCCTGTTCTGCTGG

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references