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Status
PP_000RFF6.3
All versions
PP_000RFF6.1
(Revised)
PP_000RFF6.2
(Revised)
PP_000RFF6.3
(Latest version)
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Display Name: Pakistan/PP_000RFF6.3/2022-01-01
Chohan,
S. M.; Jamil,
N.; Naqvi,
W. H.; Khan,
S.
Submission details
Submission ID
PP801031.1.S
Submitter
insdc_ingest_user
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-10-29 17:10:51 UTC
Date released
2024-10-29 17:15:40 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-08-27 12:11
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
Centers of Excellence in Sciences and Applied Technology, Molecular Biology Division
Alignment states and QC metrics S
Completeness S
28.53%
Length S
477
Total ambiguous nucs S
0
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
62
Total unknown nucs S
0
Sample details
Collection country
Pakistan
Collection date
2022-01-01
Isolate name
CCHFV-T26-2022-2
Host
Host name scientific
Ixodoidea
Host taxon id
297308
INSDC
INSDC accession S
PP801031.1
NCBI release date
2024-05-23
Nucleotide mutations
Substitutions
S
S:
G
1030
A
S:
G
1033
T
S:
G
1036
C
S:
C
1048
T
S:
T
1051
C
S:
G
1054
A
S:
A
1057
G
S:
A
1063
G
S:
A
1072
G
S:
T
1096
A
S:
T
1099
C
S:
C
1100
T
S:
C
1108
T
S:
C
1147
T
S:
T
1174
C
S:
T
1183
C
S:
C
1193
T
S:
T
1195
G
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Deletions
None
Insertions
None
Amino acid mutations
Substitutions
NP
NP:
V
436
I
Deletions
None
Insertions
None
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