PP_000RF9J.3

Display Name: Pakistan/PP_000RF9J.3/2022-01-01
Chohan, S. M.; Jamil, N.; Naqvi, W. H.; Khan, S.

Submission details

Submission ID
PP801023.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-10-29 17:10:51 UTC
Date released
2024-10-29 17:16:10 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-08-27 12:11insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
Centers of Excellence in Sciences and Applied Technology, Molecular Biology Division

Alignment states and QC metrics S

Completeness S
28.53%
Length S
477
Total ambiguous nucs S
0
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
53
Total unknown nucs S
0

Sample details

Collection country
Pakistan
Collection date
2022-01-01
Isolate name
CCHFV-M20-2022-2

Host

Host name scientific
Ixodoidea
Host taxon id
297308

INSDC

INSDC accession S
PP801023.1
NCBI release date
2024-05-23

Nucleotide mutations

Substitutions

S

  • S:G1033C
  • S:G1036C
  • S:C1045T
  • S:C1048T
  • S:C1055T
  • S:A1072G
  • S:T1075C
  • S:T1096A
  • S:T1099C
  • S:C1105T
  • S:G1123A
  • S:C1141T
  • S:T1144C
  • S:T1174C
  • S:T1183C
  • S:C1189T
  • S:T1195G
  • S:T1204C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Substitutions

    NP

  • NP:Q405L
  • NP:V436I
    • Deletions
    None
    Insertions
    None