PP_000RF9J.3

Display Name: Pakistan/PP_000RF9J.3/2022
S. M. Chohan, N. Jamil, W. H. Naqvi & S. Khan

Sample details

Collection date
2022
Country
Pakistan
Isolate name
CCHFV-M20-2022-2

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-08-27 12:11insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Centers of Excellence in Sciences and Applied Technology, Molecular Biology Division

INSDC

INSDC accession S
NCBI release date
2024-05-23

Host

Host taxon ID
Host name - scientific
Ixodoidea

Alignment and QC metrics S

Length S
477
Completeness S
28.53%
# of SNPs S
53
# of inserted bases S
0
# of deleted bases S
0
# of ambiguous bases S
0
# of unknown bases S
0
# of frame shifts S
0
# of stop codons S
0

Submission details

Submission ID
PP801023.1.S
Submitting group
Date submitted
2024-10-29 17:10:51 UTC
Date released
2024-10-29 17:16:10 UTC
Earliest release date
2024-05-23

Lineage

Segment S Lineage
IV.1

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:G1033C
  • S:G1036C
  • S:C1045T
  • S:C1048T
  • S:C1055T
  • S:A1072G
  • S:T1075C
  • S:T1096A
  • S:T1099C
  • S:C1105T
  • S:G1123A
  • S:C1141T
  • S:T1144C
  • S:T1174C
  • S:T1183C
  • S:C1189T
  • S:T1195G
  • S:T1204C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:Q405L
  • NP:V436I
    • Deletions
    None
    Insertions
    None

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