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Status
PP_000RF3W.3
Version 3
PP_000RF3W.1
Previous version
PP_000RF3W.2
Previous version
PP_000RF3W.3
Latest version
All versions
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Display Name: Pakistan/PP_000RF3W.3/2022-01-01
Chohan, S. M.;
Jamil, N.;
Naqvi, W. H.;
Khan, S.
Submission details
Submission ID
PP801025.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-10-29 17:10:51 UTC
Date released
2024-10-29 17:16:10 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-08-27 12:11
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
Centers of Excellence in Sciences and Applied Technology, Molecular Biology Division
Alignment and QC metrics S
Completeness S
28.53%
Length S
477
Total ambiguous nucs S
0
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
62
Total unknown nucs S
0
Sample details
Earliest release date
2024-05-23
Collection country
Pakistan
Collection date
2022
Collection date (lower bound)
2022-01-01
Collection date (upper bound)
2022-12-31
Isolate name
CCHFV-T1-2022-2
Host
Host name - scientific
Ixodoidea
Host taxon ID
297308
INSDC
INSDC accession S
PP801025.1
NCBI release date
2024-05-23
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
S
S:
G
1030
A
S:
G
1033
T
S:
G
1036
C
S:
C
1048
T
S:
T
1051
C
S:
G
1054
A
S:
A
1057
G
S:
A
1063
G
S:
A
1072
G
S:
T
1096
A
S:
T
1099
C
S:
C
1100
T
S:
C
1108
T
S:
C
1147
T
S:
T
1174
C
S:
T
1183
C
S:
C
1193
T
S:
T
1195
G
Show more
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
NP
NP:
V
436
I
Deletions
None
Insertions
None
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