PP_000RF3W.3

Pakistan/PP_000RF3W.3/2022
S. M. Chohan, N. Jamil, W. H. Naqvi & S. Khan

Centers of Excellence in Sciences and Applied Technology, Molecular Biology Division

Sample details

Collection date
2022
Sampling location
Pakistan
Isolate name
CCHFV-T1-2022-2

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-08-27 12:11insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession S
NCBI release date
2024-05-23

Host

Host

Submission details

Submission ID
PP801025.1.S
Submitting group
Date submitted
2024-10-29 17:10:51 UTC
Date released
2024-10-29 17:16:10 UTC
Earliest release date
2024-05-23

Lineage

Segment S Lineage
IV.2

Alignment and QC

Length S
477 (28.5%)
# of SNPs S
62

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • G1030A
  • G1033T
  • G1036C
  • C1048T
  • T1051C
  • G1054A
  • A1057G
  • A1063G
  • A1072G
  • T1096A
  • T1099C
  • C1100T
  • C1108T
  • C1147T
  • T1174C
  • T1183C
  • C1193T
  • T1195G
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

NP

  • NP:V436I
Deletions
N/A
Insertions
N/A

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