Pathoplexus
Crimean-Congo Hemorrhagic Fever Virus
Crimean-Congo Hemorrhagic Fever Virus
Ebola Sudan
Ebola Zaire
West Nile Virus
Browse
Submit
SeqSets
News
About
Docs
Login
Loculus
Browse
Submit
SeqSets
News
About
Docs
Login
API docs
Governance
Contact
Status
PP_000RETG.2
All versions
PP_000RETG.1
(Revised)
PP_000RETG.2
(Latest version)
Download FASTA
Display Name: Indonesia/PP_000RETG.2/2023-02-21
M.-S. Rieu,
S.-R. Ji,
H.-R. Byun,
S.-W. Han,
C.-Y. Choi,
H.-Y. Nam,
S.-G. Seo,
J.-S. Chae
Submission details
Submission ID
PP334107.1.S
Submitter
insdc_ingest_user
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-09-26 15:01:57 UTC
Date released
2024-09-26 15:22:15 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-08-27 12:11
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
Seoul National University, Labaratory of Veterinary Internal Medicine
Alignment states and QC metrics S
Completeness S
15.55%
Length S
260
Total ambiguous nucs S
0
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
40
Total unknown nucs S
0
Sample details
Collection country
Indonesia
Collection date
2023-02-21
Isolate name
IN12T1
Host
Host name scientific
Bos taurus
Host taxon id
9913
INSDC
INSDC accession S
PP334107.1
NCBI release date
2024-08-15
Nucleotide mutations
Substitutions
S
S:
G
292
A
S:
C
295
T
S:
C
310
T
S:
A
322
G
S:
A
325
G
S:
A
331
G
S:
A
337
G
S:
A
349
G
S:
G
353
T
S:
T
364
C
S:
G
367
A
S:
C
370
T
S:
A
379
G
S:
G
381
A
S:
T
382
C
S:
A
386
G
S:
A
394
G
S:
C
400
T
Show more
Deletions
None
Insertions
None
Amino acid mutations
Substitutions
NP
NP:
A
100
S
NP:
S
109
N
NP:
T
111
A
NP:
T
124
A
NP:
G
125
N
Deletions
None
Insertions
None
Load sequences