PP_000RETG.2

Display Name: Indonesia/PP_000RETG.2/2023-02-21
Rieu, M.-S.; Ji, S.-R.; Byun, H.-R.; Han, S.-W.; Choi, C.-Y.; Nam, H.-Y.; Seo, S.-G.; Chae, J.-S.

Submission details

Submission ID
PP334107.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-09-26 15:01:57 UTC
Date released
2024-09-26 15:22:15 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-08-27 12:11insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
Seoul National University, Labaratory of Veterinary Internal Medicine

Alignment states and QC metrics S

Completeness S
15.55%
Length S
260
Total ambiguous nucs S
0
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
40
Total unknown nucs S
0

Sample details

Collection country
Indonesia
Collection date
2023-02-21
Isolate name
IN12T1

Host

Host name scientific
Bos taurus
Host taxon id
9913

INSDC

INSDC accession S
PP334107.1
NCBI release date
2024-08-15

Nucleotide mutations

Substitutions

S

  • S:G292A
  • S:C295T
  • S:C310T
  • S:A322G
  • S:A325G
  • S:A331G
  • S:A337G
  • S:A349G
  • S:G353T
  • S:T364C
  • S:G367A
  • S:C370T
  • S:A379G
  • S:G381A
  • S:T382C
  • S:A386G
  • S:A394G
  • S:C400T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Substitutions

    NP

  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:T124A
  • NP:G125N
    • Deletions
    None
    Insertions
    None