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Crimean-Congo Hemorrhagic Fever Virus
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PP_000RELW.4
Version 4
PP_000RELW.1
Previous version
PP_000RELW.2
Previous version
PP_000RELW.3
Previous version
PP_000RELW.4
Latest version
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Download metadata TSV
Georgia/PP_000RELW.4/2023
L. S. Karan,
N. E. Perekopskaya,
E. S. Morozkin &
G. V. Roev
Central Research Institute of Epidemiology, Department of Molecular Diagnostic and Epidemiology
Sample details
Collection date
2023
Sampling location
Georgia
Isolate name
GE/Ser-H/2023
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2024-08-27 12:11
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
INSDC
INSDC accession L
PP116320.1
INSDC accession M
PP116319.1
INSDC accession S
PP116318.1
BioProject accession
PRJNA1063190
BioSample accession
SAMN39328239
NCBI release date
2024-02-10
Raw reads accession
SRR27477368
Host
Host
Homo sapiens
Submission details
Submission ID
PP116320.1.L/PP116319.1.M/PP116318.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-02-03 14:58:46 UTC
Date released
2025-02-03 14:58:58 UTC
Earliest release date
2024-02-10
Lineage
Segment S Lineage
V
Alignment and QC
Length S
1658 (99%)
# of SNPs S
265
# of inserted bases S
2
Length L
12124 (99.9%)
# of SNPs L
1323
# of inserted bases L
34
# of deleted bases L
2
Length M
5342 (99.6%)
# of SNPs M
1050
# of inserted bases M
1
# of deleted bases M
3
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
G
23
T
A
35
G
A
42
T
G
43
C
T
47
G
T
49
C
A
53
G
T
58
C
C
59
T
C
63
G
C
64
G
T
66
C
A
72
G
A
73
C
A
91
G
G
93
A
C
100
T
A
109
G
Show more
M
T
40
A
G
50
A
A
51
G
G
62
C
T
65
C
T
67
C
T
68
C
A
69
G
T
71
A
G
76
T
A
80
G
T
83
C
G
84
A
T
86
C
C
92
T
T
100
C
T
102
C
C
103
T
Show more
S
T
49
C
A
50
T
G
54
A
G
76
A
T
79
C
A
81
G
G
99
A
G
100
A
A
109
G
C
115
T
A
121
G
G
134
A
C
142
T
T
157
C
C
166
T
G
171
A
T
175
A
C
178
A
Show more
Deletions
L
12093, 12094
M
321-323
Insertions
L
ins_67:C, ins_11924:G, ins_12108:TTCATTATTTGCAGGGTGTGGGGGGAACGATT
M
ins_5171:T
S
ins_1577:A, ins_1672:C
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
I
3
T
GPC:
S
4
L
GPC:
M
6
V
GPC:
Y
7
C
GPC:
A
8
F
GPC:
C
11
Y
GPC:
Q
13
R
GPC:
C
15
L
GPC:
E
19
G
GPC:
T
20
A
GPC:
S
23
Q
GPC:
H
24
S
GPC:
E
26
T
GPC:
R
28
E
GPC:
K
31
G
GPC:
T
32
K
GPC:
D
33
N
GPC:
T
34
N
Show more
NP
NP:
N
9
S
NP:
R
15
K
NP:
V
27
M
NP:
S
39
N
NP:
R
45
K
NP:
A
100
S
NP:
S
109
N
NP:
T
111
A
NP:
T
124
A
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
K
265
R
NP:
R
270
K
NP:
I
277
T
NP:
S
301
G
NP:
A
307
P
Show more
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
D
55
A
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
R
80
K
RdRp:
K
91
E
RdRp:
R
156
K
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
T
215
I
RdRp:
K
218
R
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
V
352
I
Show more
Deletions
GPC
GPC:77
Insertions
N/A
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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