PP_000REKY.3

Display Name: Iran/PP_000REKY.3/2022
S. Sarmadi, H. Najafi, Z. Ziafati Kafi, N. Sadri, F. Jamiri, A. Bakhshi, A. Abbassioun & A. Ghalyanchi Langeroudi

Sample details

Collection date
2022
Country
Iran
Isolate name
UT-SS1

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-08-27 12:11insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Tehran, Microbiology & Immunology

INSDC

INSDC accession S
NCBI release date
2024-01-24

Host

Host taxon ID
Host name - scientific
Ixodoidea

Alignment and QC metrics S

Length S
154
Completeness S
9.21%
# of SNPs S
27
# of inserted bases S
0
# of deleted bases S
0
# of ambiguous bases S
0
# of unknown bases S
0
# of frame shifts S
0
# of stop codons S
0

Submission details

Submission ID
PP107910.1.S
Submitting group
Date submitted
2024-10-29 17:10:51 UTC
Date released
2024-10-29 17:16:10 UTC
Earliest release date
2024-01-24

Lineage

Segment S Lineage
IV.1

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:T334G
  • S:A337G
  • S:C343T
  • S:G346A
  • S:A358G
  • S:C361T
  • S:G367A
  • S:C370T
  • S:A379G
  • S:A394G
  • S:G397A
  • S:C400T
  • S:C403A
  • S:C406T
  • S:G409C
  • S:G418A
  • S:G421A
  • S:A425T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:D116E
  • NP:T124S
  • NP:G125N
    • Deletions
    None
    Insertions
    None

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