PP_000REAH.3

France/PP_000REAH.3/2023
C. Picard & S. Baize

Institut Pasteur, Virology

Sample details

Collection date
2023
Sampling location
France
Isolate name
3AK6

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-08-27 12:11insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession L
INSDC accession M
INSDC accession S
NCBI release date
2024-01-21

Host

Host

Submission details

Submission ID
PP067065.1.L/PP067079.1.M/PP067053.1.S
Submitting group
Date submitted
2024-10-29 17:10:51 UTC
Date released
2024-10-29 17:16:10 UTC
Earliest release date
2024-01-21

Lineage

Segment S Lineage
III

Alignment and QC

Length L
11838 (97.8%)
# of SNPs L
244
Length M
4335 (80.8%)
# of SNPs M
373
Length S
1449 (86.7%)
# of SNPs S
107

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • G93A
  • A220G
  • T254A
  • A298G
  • C313T
  • T340C
  • T550A
  • G553A
  • C568T
  • G619A
  • C673T
  • C727T
  • A745G
  • G766A
  • T781C
  • T790C
  • C829T
  • A859G

M

  • G818A
  • A833G
  • A840G
  • T860C
  • T866C
  • T872C
  • T887C
  • G890C
  • T897C
  • A899T
  • G908A
  • A911T
  • T938C
  • A941G
  • G944A
  • A955G
  • T968C
  • C983T

S

  • G67A
  • G99A
  • G100A
  • C178A
  • G189A
  • T199C
  • G202A
  • G229A
  • C235T
  • A247G
  • G271A
  • C295T
  • A298G
  • A322G
  • A327G
  • G346A
  • A358C
  • C370T
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:K250E
  • GPC:Q273H
  • GPC:K288R
  • GPC:T298A
  • GPC:K302E
  • GPC:P334H
  • GPC:G336K
  • GPC:L337P
  • GPC:E341K
  • GPC:I377V
  • GPC:V385A
  • GPC:V433L
  • GPC:I445A
  • GPC:A448T
  • GPC:Y455H
  • GPC:V459T
  • GPC:D484G
  • GPC:A511V

NP

  • NP:R15K
  • NP:R45K
  • NP:K91R
  • NP:T124A
  • NP:G125N
  • NP:L179Q
  • NP:H195R
  • NP:I246V
  • NP:S301G
  • NP:T418I
  • NP:K428R
  • NP:V436I

RdRp

  • RdRp:S6N
  • RdRp:Y60N
  • RdRp:I223M
  • RdRp:I261M
  • RdRp:I505T
  • RdRp:T767A
  • RdRp:R770K
  • RdRp:I783V
  • RdRp:K809R
  • RdRp:G812E
  • RdRp:T876S
  • RdRp:G1029S
  • RdRp:A1038T
  • RdRp:G1047E
  • RdRp:H1161N
  • RdRp:D1173N
  • RdRp:V1228I
  • RdRp:N1244S
Deletions
N/A
Insertions
N/A

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