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Status
PP_000RE6R.3
All versions
PP_000RE6R.1
(Revised)
PP_000RE6R.2
(Revised)
PP_000RE6R.3
(Latest version)
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Download FASTA
Download metadata TSV
Display Name: France/PP_000RE6R.3/2023-01-01
Picard,
C.; Baize,
S.
Submission details
Submission ID
PP067064.1.L/PP067078.1.M/PP067050.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-10-29 17:10:51 UTC
Date released
2024-10-29 17:16:10 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-08-27 12:11
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
Institut Pasteur, Virology
Alignment states and QC metrics L
Completeness L
97.77%
Length L
11838
Total ambiguous nucs L
0
Total deleted nucs L
0
Total frame shifts L
0
Total inserted nucs L
0
Total SNPs L
239
Total unknown nucs L
0
Alignment states and QC metrics M
Completeness M
80.79%
Length M
4335
Total ambiguous nucs M
0
Total deleted nucs M
0
Total frame shifts M
0
Total inserted nucs M
0
Total SNPs M
377
Total unknown nucs M
0
Alignment states and QC metrics S
Completeness S
86.66%
Length S
1449
Total ambiguous nucs S
0
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
106
Total unknown nucs S
0
Sample details
Collection country
France
Collection date
2023-01-01
Isolate name
9AG6
Host
Host name scientific
Hyalomma marginatum
Host taxon id
34627
INSDC
INSDC accession L
PP067064.1
INSDC accession M
PP067078.1
INSDC accession S
PP067050.1
NCBI release date
2024-01-21
Nucleotide mutations
Substitutions
L
L:
G
93
A
L:
A
220
G
L:
T
254
A
L:
A
298
G
L:
C
313
T
L:
T
340
C
L:
T
550
A
L:
G
553
A
L:
C
568
T
L:
G
619
A
L:
C
673
T
L:
C
727
T
L:
A
745
G
L:
G
766
A
L:
T
781
C
L:
T
790
C
L:
C
829
T
L:
A
859
G
Show more
M
M:
G
818
A
M:
A
833
G
M:
A
840
G
M:
T
860
C
M:
T
866
C
M:
T
872
C
M:
T
887
C
M:
G
890
C
M:
T
897
C
M:
A
899
T
M:
G
908
A
M:
A
911
T
M:
T
938
C
M:
A
941
G
M:
G
944
A
M:
A
955
G
M:
T
968
C
M:
C
983
T
Show more
S
S:
G
67
A
S:
G
99
A
S:
G
100
A
S:
C
178
A
S:
G
189
A
S:
T
199
C
S:
G
202
A
S:
G
229
A
S:
C
235
T
S:
A
247
G
S:
G
271
A
S:
C
295
T
S:
A
298
G
S:
A
322
G
S:
A
327
G
S:
G
346
A
S:
A
358
C
S:
C
370
T
Show more
Deletions
None
Insertions
None
Amino acid mutations
Substitutions
GPC
GPC:
K
250
E
GPC:
Q
273
H
GPC:
K
288
R
GPC:
T
298
A
GPC:
K
302
E
GPC:
P
334
H
GPC:
G
336
K
GPC:
L
337
P
GPC:
E
341
K
GPC:
I
377
V
GPC:
V
385
A
GPC:
V
433
L
GPC:
I
445
A
GPC:
A
448
T
GPC:
Y
455
H
GPC:
V
459
T
GPC:
D
484
G
GPC:
A
511
V
Show more
NP
NP:
R
15
K
NP:
R
45
K
NP:
K
91
R
NP:
T
124
A
NP:
G
125
N
NP:
L
179
Q
NP:
H
195
R
NP:
I
246
V
NP:
S
301
G
NP:
T
418
I
NP:
K
428
R
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
Y
60
N
RdRp:
I
223
M
RdRp:
I
261
M
RdRp:
I
505
T
RdRp:
T
767
A
RdRp:
R
770
K
RdRp:
I
783
V
RdRp:
K
809
R
RdRp:
G
812
E
RdRp:
T
876
S
RdRp:
G
1029
S
RdRp:
A
1038
T
RdRp:
G
1047
E
RdRp:
H
1161
N
RdRp:
D
1173
N
RdRp:
V
1228
I
RdRp:
N
1244
S
Show more
Deletions
None
Insertions
None
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